Bioinformatics Research Group Report on NGS Data Analysis and HPC Resources
"Discover how the Bioinformatics Research Group at Covenant University in Nigeria utilized HPC resources for NGS data analysis during the WACREN e-Research Hackfest in Lagos. Learn about their progress, future plans, and key findings. Funding provided by the EU's Horizon 2020 program."
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HPC416S - Final report Trust Odia Covenant University Bioinformatics Research Group - Nigeria (trust.odia@covenantuniversity.edu.ng) WACREN e-Research Hackfest Lagos (Nigeria) This project has received funding from the European Union s Horizon 2020 research and innovation programme under grant agreement n 654237
Outline Outline Scientific problem Work done during the hackfest Results achieved so far Future plans Summary and conclusions 2
Scientific problem (duplicate this slide as many time as needed) Scientific problem (duplicate this slide as many time as needed) To Provide remote users access to HPC resources for NGS data analysis (Metagenomics) To be able to process large NGS data. 3
Work done during the Hackfest Work done during the Hackfest Built scripts, packaged dependent tools and created workflow documentation. Pushed the above to github for easy access. Built tool stack for deployment of SG grid Understood the use of relevant/required tools for my proposed use-case Still trying to install CVMFS client on our HPC & Local machine ; to use on the africa grid. CVMFS will serve as an environment for the scripts and tools. Installed ansible for site deployment on our HPC Installing FG on our HPC 4
Results achieved so far Results achieved so far Scripts and tools required for analysis are accessible on github https://github.com/trustodia/HackFest Clear picture/understanding of the architecture of deploying my application on SG using their tools. Opened a category for discussion on discourse.sci-gaia.eu Working with Brucellino to fix hidden issues with repos. 5
Future plans Future plans Run cvmfs on our HPC Build the web-interface and integrate on SG Add more tools, applications and scripts to SG Replicate HackFest in my institution and teach others what I have learnt. To showcase my application in Pretoria. 6
Summary and conclusions Summary and conclusions I have learnt new tools relevant to my career on Sci-gaia platform. There is a lot More to learn !!! * panting* 7
Thank you! WACREN EKO-Konnect Sci-gaia LASU & Prof. Benjamin @Brucellino Mario Roberto Riccardo participants
