Cancer Genome Analysis Tools & Workshops
Framework for epigenomics analysis tools like TCGAbiolinks, Elmer, and FunciVAR for interpreting the cancer genome. Explore workshops on integrative analysis, methylation experiments, variant annotation, TF networks, and chromatin states.
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Presentation Transcript
TCGAbiolinks, Elmer & FunciVAR: Tools for analysis and interpretation of the cancer genome Bioinformatics and Functional Genomics Benjamin Berman Dennis Hazelett
A complete framework for epigenomics analysis TCGAbiolinks GDC data Germline ELMER Somatic tissue Disease samples FunciVAR
Workshop 1: Tiago Silva (July 28th 1:00-2:45) Integrative analysis with TCGAbiolinks and ELMER Search and download Methylation experiments Summarized Exp object TCGABiolinks GUI Identify DNA methylation changes Correlate methylation with gene expression Upstream TF networks
Workshop 2: Simon Coetzee (Date-Time) Variant Annotation with FunciVAR, StateHub and MotifBreakR Annotation and enrichment analysis with FunciVAR TF disruption Chromatin states
