CS515: Bioinformatic Algorithms Overview
Dive into the world of bioinformatic algorithms with Dr. Robert Heckendorn in CS515. Explore topics such as shotgun sequencing, Avida simulation, Python programming, and more. Class composition includes a mix of CS, biologist, and math backgrounds. Syllabus features assignments, tests, and submission guidelines. Submit homework via the class website for evaluation. Remember to ask questions and utilize laptops in class for your work. Stay updated with class news and announcements for hints on assignments.
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Presentation Transcript
Overview of class CS515: Bioinformatic Algorithms Dr. Robert Heckendorn
Instructor Dr. Robert Heckendorn Web Page: http://marvin.cs.uidaho.edu/~heckendo/
Course Content First 8 chapters or so chapters of Durbin Lots of supplemental material Shotgun sequencing Avida simulation Try some Python Focus on algorithms that process sequences
Class Composition Class background is varied: CS, biologist, math... I am a CS person and not a biologist
Class Page Content Class News About the Class Syllabus Assignments Submit assignments Class policies Helpful handouts
Syllabus The syllabus is based on last time class was taught and is only an estimate Assignment links are only active after assignment has been made Homework problems change (we will have about 6 assignments + a short presentation) At least two tests (including the final)
Submitting Homework Submitted via Web site Use correct file format Submit as many times as you want Last submission before due time is the one graded. Code will be compiled and run on test machine and results compared against expected results
Tips and Policy Partial credit so always submit something There are no late assignments Medical problems/family emergencies etc require paper documentation Ask questions. If you are lost then ask
Tips and Policy Laptops in class are great Do your own work unless otherwise specified
Class News Hints on assignments Delay of due date Special announcements Watch this box
