Improved Global Alignment for Bio 131 Individual Project
Explore the process of affine gap alignment for improved global alignment in the Bio 131 individual project. Learn about initializing multiple tables, filling alignment and backtrack tables, testing with short and real sequences, and interpreting results. Witness the effectiveness of the algorithm through visual representations and score differentials.
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Presentation Transcript
- Code Structure - Data - Results - interpretation Affine Gap Alignment Affine Gap Alignment - - An improved global alignment An improved global alignment Bio 131 individual project Yu Fu, O56922
- Initialize 4 tables instead of 2 (3 alignment tables + 1 backtrack table) - Fill the alignment tables (Dynamic programming) - Fill the backtrack table - Table to Alignment Bio 131 individual project Yu Fu, O56922
- Data - Short sequences for testing - Real Sequences Bio 131 individual project Yu Fu, O56922
- Data - Short sequences for testing - Result It works! Bio 131 individual project Yu Fu, O56922
- Data - Real Sequences Score = -4624 Score = -903 Bio 131 individual project Yu Fu, O56922
More Gaps Less Gaps
