Land Group Publications Overview - Latest Research Papers 2015-2016

Land Group Publications Overview Published: 18 (past year) In review: 20 In preparation/planned: 25

Papers published (18 total, 2015-2016) Brunke, M.A., P. Broxton, J. Pelletier, D. Gochis, P. Hazenberg, D. Lawrence, L.R. Leung, G.-Y. Niu, P. Troch, and X. Zeng. 2016. Implementing and Testing Variable Soil Thickness in the Community Land Model Version 4.5 . J. Clim., 29, 3441-3461, doi:10.1175/JCLI-D-15-0307.1. Ghimire, B., Riley, W. J., Koven, C. D., Mu, M., and Randerson, J. T.: Representing leaf and root physiological traits in CLM improves global carbon and nitrogen cycling predictions, JAMES, 10.1002/2015MS000538, 2016. He, H., Dali Wang, Jindong Tan, Data Synthesis of Time Series in Community Land Model for Climate Simulation, Journal of Computational Sciences, 10.1016/j.jocs.2016.01.005. Li, H.-Y., L.R. Leung, A. Getirana, M. Huang, H. Wu, Y. Xu, J. Guo, and N. Voisin. 2015. Evaluating Global Streamflow Simulations by a Physically- Based Routing Model Coupled With the Community Land Model. J. Hydrometeor., 16, 948-971, doi:10.1175/JHM-D-14-0079.1. Mao, J., A. Ribes, B. Yan, X. Shi, P. E. Thornton, R. Seferian, P. Ciais, R. B. Myneni, H. Douville, S. Piao, Z. Zhu, R. E. Dickinson, Y. Dai, D. M. Ricciuto, M. Jin, F. M. Hoffman, B. Wang, M. Huang and X. Lian 2016. Human-induced greening of the northern extratropical land surface. Nature Clim. Change advance online publication DOI: 10.1038/nclimate3056

Published (contd) Mao, J., D. M. Ricciuto, P. E. Thornton, J. M. Warren, A. W. King, X. Shi, C. M. Iversen and R. J. Norby. 2016. Evaluating the Community Land Model in a pine stand with shading manipulations and 13CO2 labeling. Biogeosciences 13(3): 641-657. Metcalfe, D. B., D. Ricciuto, S. Palmroth, C. Campbell, V. Hurry, J. Mao, S. G. Keel, S. Linder, X. Shi, T. N sholm, K. E. A. Ohlsson, M. Blackburn, P. E. Thornton and R. Oren 2016. Informing climate models with rapid chamber measurements of forest carbon uptake. Global Change Biology: n/a-n/a DOI: 10.1111/gcb.13451. Medlyn, B. E., De Kauwe, M. G., Zaehle, S., Walker, A. P., Duursma, R. A., Luus, K., Mishurov, M., Pak, B., Smith, B., Wang, Y.-P., Yang, X., Crous, K. Y., Drake, J. E., Gimeno, T. E., Macdonald, C. A., Norby, R. J., Power, S. A., Tjoelker, M. G. and Ellsworth, D. S. (2016), Using models to guide field experiments: a priori predictions for the CO2 response of a nutrient- and water-limited native Eucalypt woodland. Glob Change Biol, 22: 2834 2851. Ren, H., Z. Hou, M. Huang, J. Bao, Y. Sun, T. Tesfa, and L.R. Leung. 2016. Classification of Hydrological Parameter Sensitivity and Evaluation of Parameter Transferability Across 431 US MOPEX Basins. J. Hydrol., 536, 92-108, doi: 10.1016/j.jydrol.2016.02.042.

Published (contd) Raczka, B., Duarte, H. F., Koven, C. D., Ricciuto, D., Thornton, P. E., Lin, J. C., and Bowling, D. R. (2016): An observational constraint on stomatal function in forests: evaluating coupled carbon and water vapor exchange with carbon isotopes in the Community Land Model (CLM 4.5), Biogeosciences Discussions, doi:10.5194/bg-2016-73, accepted for publication in Biogeosciences Tang, J. Y.: On the relationships between the Michaelis-Menten kinetics, reverse Michaelis-Menten kinetics, equilibrium chemistry approximation kinetics, and quadratic kinetics, Geoscientific Model Development, 8, 3823- 3835, 2015. Tang, J. Y., and Riley, W. J.: Technical Note: A generic law-of-the-minimum flux limiter for simulating substrate limitation in biogeochemical models, Biogeosciences, 13, 723-735, doi:10.5194/bg-13-723-2016, 2016. Wang, D., J. Domke, J. Mao, X. Shi and D. M. Ricciuto (2016). "A scalable framework for the global offline community land model ensemble simulation." International Journal of Computational Science and Engineering 12(1): 73-85.

Published (contd) Xu, X., D. Hui, A. W. King, X. Song, P. E. Thornton and L. Zhang. 2015. Convergence of microbial assimilations of soil carbon, nitrogen, phosphorus, and sulfur in terrestrial ecosystems. Scientific Reports 5: 17445. Yang, X., P. E. Thornton, D. M. Ricciuto and F. M. Hoffman 2016. Phosphorus feedbacks constraining tropical ecosystem responses to changes in atmospheric CO2 and climate. Geophysical Research Letters 43(13): 7205- 7214 DOI: 10.1002/2016GL069241. Zhang Li, Jiafu Mao, Xiaoying Shi, Daniel Ricciuto, Honglin He, Peter Thornton, Guirui Yu, Shijie Han, Yingnian Li, Junhua Yan, Yanbin Hao, huimin Wang, 2016, Evaluation of the Community Land Model simulated carbon and water fluxes against observations over ChinaFLUX sites, Agricultural and Forest Meteorology, 226-227, 174-185 Zhu, Q., and Riley, W. J.: Improved modeling of soil nitrogen losses, Nature Climate Change, 5, 705-706, doi:10.1038/nclimate2696, 2015. Zhu, Q., Riley, W. J., Tang, J. Y., and Koven, C. D.: Multiple soil nutrient competition between plants, microbes, and mineral surfaces: Model development, parameterization, and example applications in several tropical forests, Biogeosciences, 13, 341-363, doi:10.5194/bg-13-341-2016, 2016.

Papers in review (20 total) Bruno, R., Augusto, L., Monod, H.; van Apeldoorn, D., Bouwman, A., Yang, X., Achat, D Chini, L., Van Oost, K., Guenet, B., Wang, R., Decharme, B., Nesme, T., Pellerin, S., Phosphorus in agricultural soils: drivers of its distribution at global scale, Global Change Biology (in review). Butler, E., et al. Mapping global leaf trait distributions. New Phytologist, in review. Duarte, H., et al. Evaluating the Community Land Model (CLM 4.5) at a Coniferous Forest Site in Northwestern United States Using Flux and Carbon-Isotope Measurements. Biogeosciences, in review Georgiou, K., Harte, J., Mesbah, A., and Riley, W. J.: A method of alternating characteristics with application to advection-dominated environmental systems, Computational Geosciences, in review. Ghimire, B., Riley, W. J., Koven, C. D., Kattge, J., Rogers, A., Reich, P. B., and Wright, I.: Global leaf nitrogen allocation for integration with terrestrial land models: A synthesis from the global plant traits (TRY) database, Ecol Appl, in review. Luo, X., H. Li, L.R. Leung, T. Tesfa, A.C.V. Getirana, F. Papa, and L.L. Hess. 2016. Modeling Surface Water Dynamics in MOSART-Inundation-v1.0: Impacts of Geomorphological Parameters and River Flow Representation in the Amazon Basin. Geosci. Model Dev. Discuss., doi:10.5194/gmd-2016-210.

Papers in review (contd) Piao, S., Zhuo Liu, Tao Wang, Sushi Peng, Philippe Ciais, Mengtian Huang, Ivan A Janssens, Su-Jong Jeong, Xin Lin, Jiafu Mao, John Miller, Anwar Mohammat, Ranga B Myneni, Josep Penuelas, Xiaoying Shi, Zhenzhong Zeng, and Pieter P Tans, 2016. Weakening temperature control on the variations of spring carbon uptake across northern lands. Under review, Nature Climate Change. Saunois, M., ..., Riley, W. J., and al., e.: Global Methane Budget, in review Earth System Science Data Discussions, 2016. Sun, Y., Peng, S., Ciais, P., Goll, D., Guenet, B., Guimberteau, M., Hinsinger, P., Janssens, I., Penuelas, J., Piao, S., Poulter, B., Violette, A., Yang, X., Yin, Y., Zeng, H., Diagnosing phosphorus limitations in natural terrestrial ecosystems in carbon cycle models, Global Change Biology (in review) Tang, J. Y., and Riley, W. J.: Divergent global carbon cycle predictions resulting from ambiguous numerical interpretation of nitrogen limitation, Biogeosciences, in review. Tesfa, T., and L.R. Leung. 2016. Exploring New Topography-based Subgrid Spatial Structures for Land Surface Modeling. Geosci. Model Dev. Discuss., doi:10.5194/gmd-2016-152.

Papers in review (contd) Thornton et al. Biospheric feedbacks on land ecosystems alter future greenhouse gas emissions and land use. Nature Climate Change. Thomas, R.T.*, Iain Colin Prentice, Heather Graven, Philippe Ciais, Joshua B. Fisher, Maoyi Huang, Deborah N. Huntzinger, Akihiko Ito, Andy Jacobson, Atul Jain, Jiafu Mao, Anna Michalak, Shushi Peng, Benjamin Poulter, Daniel M Ricciuto, Xiaoying Shi, Christopher Schwalm, Hanqin Tian, and Ning Zeng, 2016. CO2 and greening observations indicate increasing light-use efficiency in northern terrestrial ecosystems. Under review, Geophysical Research Letters. Wang, D., Benjamin Hernandez, Yu Pei, Cindy Yao, Fengming Yuan, Scott Atchley, Chad Steed, A Virtual Observation System for Earth System Models: An Application to ACME Land Model Simulations, Environmental Modeling and Software, (in review)Yang Xu, Dali Wang, Jeff Warren, Colleen Iversen, Building A Virtual Ecosystem Dynamic Model for Root Research, environmental software and modeling (under revision). Walker, A.P., Quaife, T., van Bodegom, P.M., De Kauwe, M.G. , Keenan, T.F. , Joiner, J., Lomas, M. , MacBean, N., Xu, C. , Yang, X., Woodward, F.I. , The impact of alternative trait-based Vcmax spatial-scaling hypotheses on global gross primary production, , New Phytologist (submitted)

Papers in review (contd) Yang Xu, Dali Wang, Tommy Janjusic, Wei Wu, A web-based visual analytic framework for understanding large-scale environmental models: A case study for the Community Land Model, Computing in Science and Engineering (in review) Zeng, Z., Shi X., et al. Climate mitigation from vegetation biophysical feedbacks during the past three decades. Nature Climate Change, in review. Zeng, Z. Shi, X., et al.Terrestrial water cycle intensified by recent Earth greening. Nature Ecology and Evolution, in review. Zhu, Q., Iversen, C. M., Riley, W. J., Slette, I., and Vander Stel, H.: Root competitive traits explain observed unexpected tundra vegetation nitrogen uptake patterns: Implications for trait-based land models, Global Change Biology, in review-a. Zhu, Q., Riley, W. J., and Tang, J. Y.: A new theory of plant and microbe nutrient competition resolves inconsistencies between observations and models, Ecol Lett, in review-b.

Papers in preparation/planned (25 total) Bisht, G., and Riley, W. J.: A variably saturated flow model for Earth System Models: Integration and testing at site, regional, and global scales, Hydrological and Earth System Science, in prep. Bisht, G., Riley, W. J., Wainwright, H., Yuan, F., and Romanovsky, V. E.: Impacts of microtopographic snow-redistribution on hydrologic and thermal processes in polygonal ground of an Arctic ecosystem, JAMES, in prep. Bond-Lamberty et al. Quantifying uncertainty in a coupled human-Earth System Model Calvin et al. Variance decomposition shows the importance of human-climate feedbacks in the Earth system Chen, J., Zhu, Q., Riley, W. J., Torn, M. S., He, Y., and Randerson, J. T.: Towards improved predictions of global radiocarbon ( 14C) through comparison between site observations and climate model outputs, Biogeosciences, in prep. Drewniak. Simulating Dynamic Roots in the ACME Land Model Drewniak. Climate-driven planting date in the ACME Land Model

Papers in prep/planned (contd) Flores, H. et al. Connections among traits between multiple plant organs vary across environmental gradients and growth forms. New Phytologist, in prep. Holm, J. A., Knox, R. G., Koven, C. D., Riley, W. J., Kueppers, L. M., and Fisher, R.: How is vegetation size class distribution represented in demography models? Lessons learned and paths forward, Geoscientific Model Development, in prep. Holm, J. A., Knox, R. G., Koven, C. D., and Riley, W. J.: Vegetation demographics in an earth system model framework: capturing structural forest dynamics and plant co-existence in temperate forests, Ecol Lett, in prep-a. Holm, J. A., Knox, R. G., Lima, A. J. N., Koven, C. D., Longo, M., Riley, W. J., Negron-Juarez, R. I., Araujo, A. C. d., Manzi, A., Kueppers, L. M., Moorcroft, P. R., Higuchi, N., and Chambers, J. Q.: Modeling the Central Amazon forest carbon sink and forest dynamics under current and rising atmospheric carbon dioxide, Global Change Biology, in prep-b. Jones et al. Human-mediated Carbon Cycle Feedbacks Leng, G., L. R. Leung, and M. Huang. 2017. "Global irrigation modeling with the ACME Land Model (ALM) .

Papers in prep/planned (contd) Li, H., L. R. Leung, and Z. Tan. 2017. "Global Sediment Modeling From an Integrated Earth-Human System Perspective. Ricciuto, D., et al. Evaluating models of litter and soil organic matter dynamics against multiple observational constraints. Biogeosciences, in prep. Ricciuto, D., Sargsyan, K., Thornton, P. The Impact of Parametric Uncertainties on Biogeochemistry in the ACME Land Model, in prep. Biogeosciences. Tan, Z., L. R. Leung, H. Li, T. Teklu, M. Vanmaercke, J. Poesen, X, Zhang, H. Lu, and J. Hartmann. 2017. "A Global Data Analysis of Sediment and Organic Carbon Yield for Modeling Riverine Biogeochemistry. Thornton et al. Using control systems to quantify global-scale climate- biogeochemistry feedbacks. Biogeosciences, in prep. Yang, Thornton, et al. Quantifying the impact of nitrogen and phosphorus limitation on the land components of global climate-biogeochemistry feedbacks. Biogeosciences, in prep. Yang, X., Peter Thornton, Daniel Goll, Yingping Wang, Dan Ricciuto, Sasha Reed, Rich Norby. Nutrient regulation of tropical forest response to warming a model-intercomparison at two tropical forest sites. Biogeosciences, in prep.

Papers in prep/planned (contd) Yang, X., Thornton, Norby, Ricciuto. Improve the representation of phosphorus availability and uptake in ALM. Biogeosciences, in prep. Zhu, Q., and J., R. W.: A global synthesis of plant CNP Stoichiometry: Implications for land carbon projections over the 21st century, Global Change Biology, in prep-a. Zhu, Q., and J., R. W.: Plant nitrogen and phosphorus co-limitation: Confronting models with fertilization experiments at a global scale, Journal of geophsical Research - B, in prep-b. Zhu, Q., J., R. W., and R.F., G.: Higher plant N uptake and soil N supply in a CO2 enriched world: Are we getting the right answer for the wrong reasons?, Journal of Geophsical Research - B, in prep-a. Zhu, Q., Riley, W. J., Tang, J. Y., Randerson, J. R., Hoffman, F. M., and Mu, M.: Representing carbon, nitrogen, and phosphorus interaction in the ACME Land Model v1: Model development and global benchmarking, JAMES, in prep-b.