Genome Analysis Insights
Explore detailed analyses of breakpoints, gene vs. TE overlap, recombination rates, and predictions related to genome size trends and selection preferences.
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Presentation Transcript
Breakpoint RR and TE Analysis Wyatt & Shantao 1
Gene vs TE Overlap 1.00 Avg % Gene Overlap 0.75 Avg % TE Overlap 0.67 0.50 0.46 0.40 0.36 0.25 0.25 0.25 0.00 TEI NAHR NHR 2
% TE Overlap (Class I and II) 1.00 0.75 0.67 % TE Overlap 0.50 0.44 0.25 0.25 0.25 0.01 0.00 TEI NAHR NHR Genes Background 3
Average Recombination Rate 2.00 1.75 Cm/Mb 1.50 1.43 1.41 1.36 1.29 1.25 1.16 1.00 P-Gene Gene TE BP Background 4
Average Recombination Rate 2.00 1.79 1.75 Cm/Mb 1.50 1.43 1.38 1.35 1.29 1.25 1.00 TEI NAHR NHR Gene Background 5
Prediction: Frequency v.s. RR high ? Cm/Db low 1 0 Frequency 6
Prediction: Frequency v.s. RR The trend can say a lot about how genome size grows and contracts. Once you have excess DNA how hard is it to get rid of it? Does selection prefer neutral deletions? 7
