Introduction to PLINK Coding
Explore the basics of PLINK coding with examples on handling cases, controls, and missing data. Learn how to use PLINK for genetic association studies efficiently. Access PLINK versions 1, 1.9, and 2.0 for advanced analysis.
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Introduction to Introduction to PLINK PLINK Luc a Colodro Conde and Katrina Grasby
Marees et al. Int J Methods Psychiatr Res. 2018 Jun; 27(2): e1608.
Example: plink --file {your_file} --assoc --out {your_output_file} Note default Plink coding Male = 1, Female = 2 Control = 1, Case = 2 Missing = -9, 0, non numeric Note the code for cases, controls, and missing data can be changed using different flags.
PLINK PLINK 1: http://zzz.bwh.harvard.edu/plink PLINK 1.9: https://www.cog-genomics.org/plink/1.9/ PLINK 2.0: https://www.cog-genomics.org/plink/2.0/
