Managing Data Contributions in WP6: Virtual Folder and Repository Overview
Explore the data management contributions in WP6 by Tom Kulhnek, Andrea Giachetti, and Chris Morris, including virtual folder creation, repository setup, assembly queries, and provenance tracking. Discover the motivation, use cases, and virtual machine templates used in supporting the processing and analysis of scattered data with various tools and software. Dive into metadata services, file providers, and customized virtual machines to facilitate integrative structural biology tasks.
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Presentation Transcript
WP6 Data Management Contribution: Tom Kulh nek STFC, Andrea Giachetti CERM, Chris Morris STFC Period I: D6.1 Virtual Folder Virtual machine template Period II: D6.2 Repository M30 D6.3 Assembly Queries M32 D6.4 Provenance M33
WP6 Data Management Motivation use case Support processing/analysing scattered data with different software and tools
WP6 Data Management D6.1 Virtual Folder part of VRE portal
WP6 Data Management D6.1 Virtual Folder packaged virtual appliance in virtual machine
WP6 Data Management D6.1 Virtual Folder architecture
WP6 Data Management D6.1 Virtual Folder Metadata /metadataservice/files/{alias}/{path} Currently only metadata of file name, date of creation, size, uri, Planned metadata (PROV-O) reference integration B2NOTE service provided by EUDAT
WP6 Data Management D6.1 Virtual Folder file providers /metadataservice/providers GET list of available provider types B2DROP, Dropbox, FileSystem Planned WebDav-based (B2DROP, Owncloud), B2SHARE, Google Drive, MS OneDrive, OneData, Facility specific iCAT,
WP6 Data Management Virtual machine Customized VM with software and tools installed and connected to virtual folder to support integrative structural biologist. Presented at WP4/WP5, initial image 18 MB! Initial bootstrap (10-20 mins) CernVM 4.0, bootloader to Scientific Linux 7.2(RHEL) Software and tools distributed by CernVM-FS, read-only file system /cvmfs/west-life.egi.eu SCIPION, West-life related tools /cvmfs/facilities.gridpp.ac.uk CCP4 Suite /cvmfs/wenmr.egi.eu
WP6 Challenges, not to forget Source code: https://github.com/h2020- westlife-eu/west-life-wp6 Documentation: http://internal-wiki.west- life.eu/w/index.php?title=WP6
