Step-by-Step Guide for Using BioMart to Extract SNP Information
Learn how to utilize BioMart to extract SNP information in a detailed step-by-step manner. The guide includes selecting specific data such as chromosomal regions, choosing output data like marker names, and selecting varieties/strains where the SNPs are found in wheat. Detailed visuals and instructions are provided to help you effectively navigate the process.
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Presentation Transcript
Step-by-step demo of using BioMart to extract SNP information http://plants.ensembl.org/biomart/martview How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
Selects particular data (e.g. chromosomal region) Choose data to output (e.g. marker names) How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
Choose data to output (e.g. variety/strain the SNP is found in) How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
Click results How to use Biomart to find SNP markers www.wheat-training.com
How to use Biomart to find SNP markers www.wheat-training.com
Summary of variation information iSelect, Axiom and KASP and HapMap all available Can see on browser and download on BioMart Use filters to select chromosome regions and varieties (called strains on ensembl) Use attributes to select types of data you want (i.e. columns) How to use Biomart to find SNP markers www.wheat-training.com
How to go from SNP data in Ensembl to getting KASP markers? Use PolyMarker! http://polymarker.tgac.ac.uk/ For help see our step by step guide: http://www.wheat-training.com/wp-content/uploads/Genomic_resources/How-to-use-Polymarker.pptx How to use Biomart to find SNP markers www.wheat-training.com
