Understanding K-mers in Bioinformatics
Explore the world of bioinformatics, DNA sequences, and computational analysis through the lens of K-mers. Learn about the significance of K-mers in deciphering genetic data and their relevance in the field of APL programming. Discover resources like Project Rosalind for bioinformatics problems and sharpen your skills in writing efficient APL code for analysis.
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Presentation Transcript
What the APL is a k-mer? Stefan Kruger
I write stuff on array languages xpqz.github.io/learnapl xpqz.github.io/cultivations xpqz.github.io/kbook k
Bioinformatics? Computational and statistical analysis to decipher biology from genome sequences and related data, including both DNA and RNA sequence as well as other "post-genomic" data Wikipedia
Bioinformatics? A DNA-string is just a vector... A field ideally suited to learning APL! ...even if you don't know your k-mers from your spliced motifs
Project Rosalind Bioinformatics problem collection: rosalind.info Automated results check; language independent No walk-over, but solution ratios indicate difficulty Also: strict 5 min time limit, including data download and result upload
Writing good APL Clarity > efficiency, where opposed Actual performance can depend on Dyalog version and actual processor features
Skipping this!! https://problems.tryapl.org/psets/2017.html?goto=P6_k_mers
